Source code for image_segmentation.datasets.segmentation.infrared_thermal_feet

"""
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Infrared Thermal Images of Feet
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"""

import os
from glob import glob

import cv2
import numpy as np
import tensorflow as tf
from gcpds.image_segmentation.datasets.utils import download_from_drive
from gcpds.image_segmentation.datasets.utils import unzip
from gcpds.image_segmentation.datasets.utils import listify
from sklearn.model_selection import GroupShuffleSplit


[docs]class InfraredThermalFeet: already_unzipped = False def __init__(self, split=[0.2,0.2], seed: int=42, id_: str="1HZa4pVwlIXCrRIidflB158kmtYGW23Qe"): self.split = listify(split) self.seed = seed self.__id = id_ self.__folder = os.path.join(os.path.dirname(__file__), 'Datasets','InfraredThermalFeet') self.__path_images = os.path.join(self.__folder, 'dataset') if not InfraredThermalFeet.already_unzipped: self.__set_env() InfraredThermalFeet.already_unzipped = True self.file_images = glob(os.path.join(self.__path_images, '*[!(mask)].jpg')) self.file_images = list(map(lambda x: x[:-4], self.file_images)) self.file_images.sort() self.groups = list(map(lambda x: os.path.split(x)[-1].split('_')[0], self.file_images)) self.num_samples = len(self.file_images) def __set_env(self): destination_path_zip = os.path.join(self.__folder, 'InfraredThermalFeet.zip') os.makedirs(self.__folder, exist_ok=True) download_from_drive(self.__id, destination_path_zip) unzip(destination_path_zip, self.__folder) @staticmethod def __preprocessing_mask(mask): mask = mask[...,0] > 0.5 mask = mask.astype(np.float32) return mask[...,None]
[docs] def load_instance_by_id(self, id_img): root_name = os.path.join(self.__path_images, id_img) return self.load_instance(root_name)
[docs] @staticmethod def load_instance(root_name): img = cv2.imread(f'{root_name}.jpg')/255 img = img[...,0][...,None] mask = cv2.imread(f'{root_name}_mask.png') mask = InfraredThermalFeet.__preprocessing_mask(mask) id_image = os.path.split(root_name)[-1] return img, mask, id_image
@staticmethod def __gen_dataset(file_images): def generator(): for root_name in file_images: yield InfraredThermalFeet.load_instance(root_name) return generator def __generate_tf_data(self,files): output_signature = (tf.TensorSpec((None,None,None), tf.float32), tf.TensorSpec((None,None,None), tf.float32), tf.TensorSpec(None, tf.string), ) dataset = tf.data.Dataset.from_generator(self.__gen_dataset(files), output_signature = output_signature) len_files = len(files) dataset = dataset.apply(tf.data.experimental.assert_cardinality(len_files)) return dataset def __get_log_tf_data(self,i,files): print(f' Number of images for Partition {i}: {len(files)}') return self.__generate_tf_data(files) @staticmethod def __shuffle(X,seed): np.random.seed(seed) np.random.shuffle(X) @staticmethod def _train_test_split(X, groups, random_state=42,test_size=0.2): gss = GroupShuffleSplit(n_splits=1, test_size=test_size, random_state=random_state) indxs_train, index_test = next(gss.split(X, groups=groups)) InfraredThermalFeet.__shuffle(indxs_train, random_state) InfraredThermalFeet.__shuffle(index_test, random_state) return X[indxs_train], X[index_test], groups[indxs_train], groups[index_test] def __call__(self,): file_images = np.array(self.file_images) groups = np.array(self.groups) train_imgs, test_imgs, g_train, _ = InfraredThermalFeet._train_test_split( file_images, groups, test_size=self.split[0], random_state=self.seed ) train_imgs, val_imgs, _ , _ = InfraredThermalFeet._train_test_split( train_imgs, g_train, test_size=self.split[1], random_state=self.seed ) p_files = [train_imgs, val_imgs, test_imgs] partitions = [self.__get_log_tf_data(i+1,p) for i,p in enumerate(p_files)] return partitions